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Axel Brilot (Facility Director, CBRS); Michelle Mikesh (EM and Sample Preparation Specialist)

Axel Brilot obtained his Ph.D. in Biophysics and Structural Biology developing and applying cryo-EM methods for single-particle reconstruction. He has 15 years’ experience in the cryo-EM field and has been the facility director of the Sauer Structural Biology Laboratory since 2021.

Michelle worked as a lab manager with more than 25 years of research experience before joining the CBRS in 2019. Since then, she has enjoyed assisting students and researchers with preparing and imaging samples from microbiology to materials engineering and looks forward to expanding her work with cryoEM.

Biomolecular Structure Determination by CryoEM

Member for

2 years 6 months
Full name
Gary Chiang

Transmission Electron Microscopy (TEM) and Cryogenic electron microscopy (cryo-EM)are versatile methods for biological structural characterization. Technological advancements made in the past decade have enabled cryo-EM to become an approachable high-resolution method capable of generating atomic structures.

The course will be divided into three sections: an initial 45-minute section on the room temperature (classical) EM services offered by the core; followed by two sections: an overview of the basic principles of single particle cryo-EM along the related services our core offers users, split into two approximately one hour sections with breaks between all sections. We will also discuss the practical applications of cryoEM and what a user will need to perform a successful experiment.

CB26025
Instructor

Axel Brilot (Facility Director, CBRS); Michelle Mikesh (EM and Sample Preparation Specialist)

Axel Brilot obtained his Ph.D. in Biophysics and Structural Biology developing and applying cryo-EM methods for single-particle reconstruction. He has 15 years’ experience in the cryo-EM field and has been the facility director of the Sauer Structural Biology Laboratory since 2021.

Michelle worked as a lab manager with more than 25 years of research experience before joining the CBRS in 2019. Since then, she has enjoyed assisting students and researchers with preparing and imaging samples from microbiology to materials engineering and looks forward to expanding her work with cryoEM.

Status
Open
Modality
Hybrid, but in person encouraged
Course Closes
Mon, Mar 09
Procard Disclaimer

If you use the UT ProCard for payment of courses, please be aware that you can only charge ONCE per 24 hour period. Any attempts to charge more courses will fail, and you will not be registered.

For example, you may add one to many courses for one student into your shopping cart at any one time, and charge them to the ProCard, and you should receive a "registration successful!" page at the end. This is because you registered ONCE for ONE student. If you attempt to register and pay again, for example, for a different student, this will trigger the UT ProCard security system to stop payment, and your registration will not be successful. A page stating this fact will occur after you attempt to process payment. It looks a lot like the "registration was successful" page.

Ways to avoid this are: use the ProCard after 24 hours have passed, or the student may use their credit card and be reimbursed later through the usual UT accounting methods, or process the registration with an IDT, otherwise known as an Interdepartmental Transfer (talk to someone in your department that handles the accounts).

Course Semester
Fri, Mar 13
Start Date
10:00 am - 1:00 pm

$10

Basics of Image Processing for cryo-EM-Part II

Member for

2 years 6 months
Full name
Gary Chiang

This course provides an introduction to important concepts and practical workflows of cryo-electron microscopy (cryo-EM) image processing. Participants will learn the fundamentals of single-particle analysis, including motion correction, CTF estimation, particle picking, 2D classification, 3D reconstruction, and refinement. This second session consists of a hands-on tutorial in image processing performed in cisTEM. Participants should attend the first lecture prior to attending this course.

CB26009
Instructor

Axel Brilot (Facility Director, CBRS); Michelle Mikesh (EM and Sample Preparation Specialist)

Axel Brilot obtained his Ph.D. in Biophysics and Structural Biology developing and applying cryo-EM methods for single-particle reconstruction. He has 15 years’ experience in the cryo-EM field and has been the facility director of the Sauer Structural Biology Laboratory since 2021.

Michelle worked as a lab manager with more than 25 years of research experience before joining the CBRS in 2019. Since then, she has enjoyed assisting students and researchers with preparing and imaging samples from microbiology to materials engineering and looks forward to expanding her work with cryoEM.

Status
Open
Modality
Hybrid, but in-person encouraged
Course Closes
Wed, Nov 12
Procard Disclaimer

If you use the UT ProCard for payment of courses, please be aware that you can only charge ONCE per 24 hour period. Any attempts to charge more courses will fail, and you will not be registered.

For example, you may add one to many courses for one student into your shopping cart at any one time, and charge them to the ProCard, and you should receive a "registration successful!" page at the end. This is because you registered ONCE for ONE student. If you attempt to register and pay again, for example, for a different student, this will trigger the UT ProCard security system to stop payment, and your registration will not be successful. A page stating this fact will occur after you attempt to process payment. It looks a lot like the "registration was successful" page.

Ways to avoid this are: use the ProCard after 24 hours have passed, or the student may use their credit card and be reimbursed later through the usual UT accounting methods, or process the registration with an IDT, otherwise known as an Interdepartmental Transfer (talk to someone in your department that handles the accounts).

Course Semester
Fri, Nov 14
Start Date
10:00 am - 1:00 pm

$50

Basics of Image Processing for cryo-EM-Part I

Member for

2 years 6 months
Full name
Gary Chiang

This course provides an introduction to important concepts and practical workflows of cryo-electron microscopy (cryo-EM) image processing. Participants will learn the fundamentals of single-particle analysis, including motion correction, CTF estimation, particle picking, 2D classification, 3D reconstruction, and refinement. The course consists of two sessions, with the first session consisting of a lecture, and the second session consisting of a hands-on processing session. Students intending to attend the hands-on session should ensure they have also taken this first lecture.

In order to best prepare for this course, students should learn basic concepts in cryo-EM from a short online course on cryo-EM (e.g. Cryo-EM university), as the course will build on a basic knowledge of concepts presented there.

Secondary recommended video resources:

  1. Single Particle Cryo-EM Overview by Yifan Cheng – Explains the principles of single-particle cryo-EM and 3D reconstruction from 2D images. Watch on YouTube
  2. Introduction and Cryo-EM Fundamentals (Part 1 of 6) – Covers data collection, motion correction, CTF estimation, particle picking, and 2D/3D classification using CryoSPARC. Watch on YouTube
  3. S2C2 Cryo-EM Image Processing Workshop (Full Session) – A nearly 5-hour workshop covering motion correction, CTF estimation, particle picking, 2D classification, and ab initio reconstruction. Watch on YouTube
  4. Cryo-EM: Back to Basics (Chapter 1) – A concise introduction to sample preparation, imaging, and data processing fundamentals. Watch on YouTube
  5. Single-Particle Data Analysis Walkthrough – A step-by-step CryoSPARC workflow: motion correction, CTF estimation, particle picking, classification, and refinement. Watch on YouTube
CB26008
Instructor

Axel Brilot (Facility Director, CBRS); Michelle Mikesh (EM and Sample Preparation Specialist)

Axel Brilot obtained his Ph.D. in Biophysics and Structural Biology developing and applying cryo-EM methods for single-particle reconstruction. He has 15 years’ experience in the cryo-EM field and has been the facility director of the Sauer Structural Biology Laboratory since 2021.

Michelle worked as a lab manager with more than 25 years of research experience before joining the CBRS in 2019. Since then, she has enjoyed assisting students and researchers with preparing and imaging samples from microbiology to materials engineering and looks forward to expanding her work with cryoEM.

Status
Open
Modality
Hybrid, but in-person encouraged
Course Closes
Wed, Nov 05
Procard Disclaimer

If you use the UT ProCard for payment of courses, please be aware that you can only charge ONCE per 24 hour period. Any attempts to charge more courses will fail, and you will not be registered.

For example, you may add one to many courses for one student into your shopping cart at any one time, and charge them to the ProCard, and you should receive a "registration successful!" page at the end. This is because you registered ONCE for ONE student. If you attempt to register and pay again, for example, for a different student, this will trigger the UT ProCard security system to stop payment, and your registration will not be successful. A page stating this fact will occur after you attempt to process payment. It looks a lot like the "registration was successful" page.

Ways to avoid this are: use the ProCard after 24 hours have passed, or the student may use their credit card and be reimbursed later through the usual UT accounting methods, or process the registration with an IDT, otherwise known as an Interdepartmental Transfer (talk to someone in your department that handles the accounts).

Course Semester
Mon, Nov 10
Start Date
10:00 am - 1:00 pm

$50

Biomolecular Structure Determination by CryoEM

Member for

2 years 6 months
Full name
Gary Chiang

Transmission Electron Microscopy (TEM) and Cryogenic electron microscopy (cryo-EM)are versatile methods for biological structural characterization. Technological advancements made in the past decade have enabled cryo-EM to become an approachable high-resolution method capable of generating atomic structures.

The course will be divided into three sections: an initial 45-minute section on the room temperature (classical) EM services offered by the core; followed by two sections: an overview of the basic principles of single particle cryo-EM along the related services our core offers users, split into two approximately one hour sections with breaks between all sections. We will also discuss the practical applications of cryoEM and what a user will need to perform a successful experiment.

CB25024
Instructor

Axel Brilot (Facility Director, CBRS); Michelle Mikesh (EM and Sample Preparation Specialist)

Axel Brilot obtained his Ph.D. in Biophysics and Structural Biology developing and applying cryo-EM methods for single-particle reconstruction. He has 15 years’ experience in the cryo-EM field and has been the facility director of the Sauer Structural Biology Laboratory since 2021.

Michelle worked as a lab manager with more than 25 years of research experience before joining the CBRS in 2019. Since then, she has enjoyed assisting students and researchers with preparing and imaging samples from microbiology to materials engineering and looks forward to expanding her work with cryoEM.

Status
Closed
Modality
Hybrid, but in person encouraged
Course Closes
Sat, Apr 05
Procard Disclaimer

If you use the UT ProCard for payment of courses, please be aware that you can only charge ONCE per 24 hour period. Any attempts to charge more courses will fail, and you will not be registered.

For example, you may add one to many courses for one student into your shopping cart at any one time, and charge them to the ProCard, and you should receive a "registration successful!" page at the end. This is because you registered ONCE for ONE student. If you attempt to register and pay again, for example, for a different student, this will trigger the UT ProCard security system to stop payment, and your registration will not be successful. A page stating this fact will occur after you attempt to process payment. It looks a lot like the "registration was successful" page.

Ways to avoid this are: use the ProCard after 24 hours have passed, or the student may use their credit card and be reimbursed later through the usual UT accounting methods, or process the registration with an IDT, otherwise known as an Interdepartmental Transfer (talk to someone in your department that handles the accounts).

Fri, Apr 11
Start Date
10:00 am - 1:00 pm

$10

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